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1

Kernel-based whole-genome prediction of complex traits: a review

Morota, Gota, Gianola, Daniel

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 418 KB

english, 2014

2

Divergent phenotypic response of rice accessions to transient heat stress during early seed development

Paul, Puneet, Dhatt, Balpreet K., Sandhu, Jaspreet, Hussain, Waseem, Irvin, Larissa, Morota, Gota, Staswick, Paul, Walia, Harkamal

Journal:

Year:

2020

Language:

english

File:

PDF, 3.33 MB

english, 2020

3

Allelic variation in rice Fertilization Independent Endosperm 1 contributes to grain width under high night temperature stress

Dhatt, Balpreet K, Paul, Puneet, Sandhu, Jaspreet, Hussain, Waseem, Irvin, Larissa, Zhu, Feiyu, AdvientoâBorbe, Maria Arlene, Lorence, Argelia, Staswick, Paul, Yu, Hongfeng, Morota, Gota, Walia, Har

Journal:

New Phytologist

Year:

2020

File:

PDF, 57.06 MB

2020

4

Analysis of human mini-exome sequencing data from Genetic Analysis Workshop 17 using a Bayesian hierarchical mixture model

Julio S Bueno Filho, Gota Morota, Quoc Tran, Matthew J Maenner, Lina M Vera-Cala, Corinne D Engelman, Kristin J Meyers

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 221 KB

english, 2011

5

Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data

Gota Morota, Masanori Koyama, Guilherme J M Rosa…

Journal:

Genetics Selection Evolution

Year:

2013

Language:

english

File:

PDF, 298 KB

english, 2013

6

Evaluation of linkage disequilibrium in wheat with an L1-regularized sparse Markov network

Gota Morota, Daniel Gianola

Journal:

Theoretical and Applied Genetics

Year:

2013

Language:

english

File:

PDF, 491 KB

english, 2013

7

Genome-enabled prediction of quantitative traits in chickens using genomic annotation

Morota, Gota, Abdollahi-Arpanahi, Rostam, Kranis, Andreas, Gianola, Daniel

Journal:

Year:

2014

Language:

english

File:

PDF, 195 KB

english, 2014

8

MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis

Tsuyuzaki, Koki, Morota, Gota, Ishii, Manabu, Nakazato, Takeru, Miyazaki, Satoru, Nikaido, Itoshi

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 4.70 MB

english, 2015

9

Kernel-based variance component estimation and whole-genome prediction of pre-corrected phenotypes and progeny tests for dairy cow health traits

Morota, Gota, Boddhireddy, Prashanth, Vukasinovic, Natascha, Gianola, Daniel, DeNise, Sue

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

10

Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens

Abdollahi-Arpanahi, Rostam, Morota, Gota, Valente, Bruno D., Kranis, Andreas, Rosa, Guilherme J. M., Gianola, Daniel

Journal:

Genetics Selection Evolution

Year:

2016

Language:

english

File:

PDF, 2.25 MB

english, 2016

11

Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

Timothy M. Beissinger,Gota Morota

Journal:

Year:

2017

Language:

english

File:

PDF, 868 KB

english, 2017

12

MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken

Morota, Gota, Beissinger, Timothy M., Peñagaricano, Francisco

Journal:

G3 Genes|Genome|Genetics

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

13

Comparing strategies for selection of low-density SNPs for imputation-mediated genomic prediction in U. S. Holsteins

He, Jun, Xu, Jiaqi, Wu, Xiao-Lin, Bauck, Stewart, Lee, Jungjae, Morota, Gota, Kachman, Stephen D., Spangler, Matthew L.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.65 MB

english, 2017

14

ShinyGPAS: interactive genomic prediction accuracy simulator based on deterministic formulas

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 1.00 MB

english, 2017

15

Linkage disequilibrium in Brazilian Santa Inês breed, Ovis aries

Alvarenga, Amanda Botelho, Rovadoscki, Gregori Alberto, Petrini, Juliana, Coutinho, Luiz Lehmann, Morota, Gota, Spangler, Matthew L., Pinto, Luís Fernando Batista, Carvalho, Gleidson Giordano Pinto, M

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.59 MB

english, 2018

16

Predictive ability of genome-assisted statistical models under various forms of gene action

Momen, Mehdi, Mehrgardi, Ahmad Ayatollahi, Sheikhi, Ayyub, Kranis, Andreas, Tusell, Llibertat, Morota, Gota, Rosa, Guilherme J. M., Gianola, Daniel

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.86 MB

english, 2018

17

Do stronger measures of genomic connectedness enhance prediction accuracies across management units?

Yu, Haipeng, Spangler, Matthew L, Lewis, Ronald M, Morota, Gota

Journal:

Journal of Animal Science

Year:

2018

Language:

english

File:

PDF, 786 KB

english, 2018

18

Utilizing random regression models for genomic prediction of a longitudinal trait derived from high-throughput phenotyping

Campbell, Malachy, Walia, Harkamal, Morota, Gota

Journal:

Year:

2018

Language:

english

File:

PDF, 1.93 MB

english, 2018

19

Quantifying genomic connectedness and prediction accuracy from additive and non-additive gene actions

Momen, Mehdi, Morota, Gota

Journal:

Genetics Selection Evolution

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

20

Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

Momen, Mehdi, Ayatollahi Mehrgardi, Ahmad, Amiri Roudbar, Mahmoud, Kranis, Andreas, Mercuri Pinto, Renan, Valente, Bruno D., Morota, Gota, Rosa, Guilherme J. M., Gianola, Daniel

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

21

Genomic Relatedness Strengthens Genetic Connectedness Across Management Units

Yu, Haipeng, Spangler, Matthew L., Lewis, Ronald M., Morota, Gota

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 1.50 MB

english, 2017

22

Genomic Bayesian Confirmatory Factor Analysis and Bayesian Network to Characterize a Wide Spectrum of Rice Phenotypes

Yu, Haipeng, Campbell, Malachy T., Zhang, Qi, Walia, Harkamal, Morota, Gota

Journal:

G3 Genes|Genome|Genetics

Year:

2019

Language:

english

File:

PDF, 554 KB

english, 2019

23

30 Mutli-omic data integration in quantitative genetics

Journal:

Journal of Animal Science

Year:

2019

Language:

english

File:

PDF, 73 KB

english, 2019

24

30 Mutli-omic data integration in quantitative genetics

Journal:

Journal of Animal Science

Year:

2019

File:

PDF, 73 KB

2019

25

Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies

Momen, Mehdi, Campbell, Malachy T., Walia, Harkamal, Morota, Gota

Journal:

Year:

2019

Language:

english

File:

PDF, 3.38 MB

english, 2019

26

Leveraging Breeding Values Obtained from Random Regression Models for Genetic Inference of Longitudinal Traits

Campbell, Malachy, Momen, Mehdi, Walia, Harkamal, Morota, Gota

Journal:

The Plant Genome

Year:

2019

Language:

english

File:

PDF, 1.18 MB

english, 2019

27

Leveraging Breeding Values Obtained from Random Regression Models for Genetic Inference of Longitudinal Traits

Campbell, Malachy, Momen, Mehdi, Walia, Harkamal, Morota, Gota

Journal:

The Plant Genome

Year:

2019

File:

PDF, 1.18 MB

2019

28

Integration of single nucleotide variants and whole-genome DNA methylation profiles for classification of rheumatoid arthritis cases from controls

Amiri Roudbar, Mahmoud, Mohammadabadi, Mohammad Reza, Ayatollahi Mehrgardi, Ahmad, Abdollahi-Arpanahi, Rostam, Momen, Mehdi, Morota, Gota, Brito Lopes, Fernando, Gianola, Daniel, Rosa, Guilherme J. M.

Journal:

Year:

2020

File:

PDF, 2.67 MB

2020

29

Variance heterogeneity genome-wide mapping for cadmium in bread wheat reveals novel genomic loci and epistatic interactions

Hussain, Waseem, Campbell, Malachy T., Jarquin, Diego, Walia, Harkamal, Morota, Gota

Journal:

The Plant Genome

Year:

2020

File:

PDF, 1.59 MB

2020

30

Structural equation modeling for investigating multi-trait genetic architecture of udder health in dairy cattle

Pegolo, Sara, Momen, Mehdi, Morota, Gota, Rosa, Guilherme J. M., Gianola, Daniel, Bittante, Giovanni, Cecchinato, Alessio

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.56 MB

2020

31

Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice (Oryza sativa)

Campbell, Malachy T, Grondin, Alexandre, Walia, Harkamal, Morota, Gota

Journal:

Journal of Experimental Botany

Year:

2020

File:

PDF, 1.65 MB

2020

32

Deciphering Cattle Temperament Measures Derived From a Four-Platform Standing Scale Using Genetic Factor Analytic Modeling

Yu, Haipeng, Morota, Gota, Celestino, Elfren F., Dahlen, Carl R., Wagner, Sarah A., Riley, David G., Hulsman Hanna, Lauren L.

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 1.28 MB

2020

33

Predicting Longitudinal Traits Derived from High-Throughput Phenomics in Contrasting Environments Using Genomic Legendre Polynomials and B-Splines

Momen, Mehdi, Campbell, Malachy T., Walia, Harkamal, Morota, Gota

Journal:

G3 Genes|Genome|Genetics

Year:

2019

File:

PDF, 2.08 MB

2019

34

An assessment of genomic connectedness measures in Nellore cattle

Amorim, Sabrina T, Yu, Haipeng, Momen, Mehdi, de Albuquerque, LÃºcia GalvÃ£o, Pereira, AngÃ©lica S Cravo, Baldi, Fernando, Morota, Gota

Journal:

Journal of Animal Science

Year:

2020

File:

PDF, 1.44 MB

2020

35

A Multiple-Trait Bayesian Variable Selection Regression Method for Integrating Phenotypic Causal Networks in Genome-Wide Association Studies

Wang, Zigui, Chapman, Deborah, Morota, Gota, Cheng, Hao

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 618 KB

2020